You can either fly to Vieques from San Juan ($86 R/T - VAL) or St. Thomas with one of the airlines or get there from the town of Fajardo by ferry or by plane. (Fajardo is about 1 hour 30 min drive from San Juan International Airport).
From Fajardo it will cost $4.00 round trip for a 1 hr ferry ride, or $40 round trip by plane on a 10 min flight.
To get from the airport to Fajardo with a car service, you can use
John's Publico!
Travel to Fajardo from San Juan
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